Defaults to clean = FALSE.įor plot: the color to be used for plotting.įor plot: the line type. See clean() for details.įor clean: if all NA intensities should be removed beforeĬleaning the Chromatogram. Time to which the Chromatogram should be subsetted.įor clean: logical(1) whether all 0 intensities should be Defaults to filter = FALSE.įor filterRt: numeric(2) defining the lower and upper retention Supported are "sum" (total ionĬhromatogram), "max" (base peak chromatogram), "min" and "mean".įor Chromatogram: integer(1) with the MS level fromįor mz: logical(1) defining whether the m/z range to filter The function that was used to aggregate intensity values for the same The OnDiskMSnExp or MSnExp from which the chromatogram was extracted.įor Chromatogram: character string specifying See details for more information.įor Chromatogram: integer(1) the index of the file within If not applicable use filterMz = c(0, 0).įor Chromatogram: numeric(2) for SRM/MRM transitions. Range (min, max) that was used to filter the original object on m/zĭimension. This is supposed toĬontain the real range of mz values in contrast to filterMz.įor Chromatogram: numeric(2) representing the mz value (min, max) on which the chromatogram was created.
See descriptionįor Chromatogram: numeric(2) representing the mz value range Numeric(1) or function to use to filter intensities. (length has to be equal to the length of rtime). Has to be equal to the length of intensity).įor Chromatogram: numeric with the intensity values ) # S4 method for Chromatogram,Chromatogram compareChromatograms ( x,įUNARGS = list (use = "" ),įor Chromatogram: numeric with the retention times (length ) # S4 method for Chromatogram,Chromatogram alignRt ( x, y, method = c ( "closest", "approx" ). ) # S4 method for Chromatogram msLevel ( object ) # S4 method for Chromatogram isEmpty ( x ) # S4 method for Chromatogram productMz ( object ) # S4 method for Chromatogram bin ( x,īreaks = seq ( floor ( min ( rtime ( x ) ) ), ceiling ( max ( rtime ( x ) ) ), by = binSize ),įun = max ) # S4 method for Chromatogram normalize ( object, method = c ( "max", "sum" ) ) # S4 method for Chromatogram filterIntensity ( object, intensity = 0. MsLevel = 1L ) aggregationFun ( object ) # S4 method for Chromatogram show ( object ) # S4 method for Chromatogram rtime ( object ) # S4 method for Chromatogram intensity ( object ) # S4 method for Chromatogram mz ( object, filter = FALSE ) # S4 method for Chromatogram precursorMz ( object ) # S4 method for Chromatogram fromFile ( object ) # S4 method for Chromatogram length ( x ) # S4 method for Chromatogram as.ame ( x ) # S4 method for Chromatogram filterRt ( object, rt ) # S4 method for Chromatogram clean ( object, all = FALSE, na.rm = FALSE ) # S4 method for Chromatogram,ANY plot ( x, Full text of "NEW" See other formats Word.
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